SANe is a seed-specific module-regulatory network designed to identify clusters of genes that tightly coexpress during the development of Arabidopsis seeds, as well as identify the Transcription Factors (TFs) that functionally regulate these clusters/modules. This platform allows users to 1) explore modules of genes that expess highly in different seed compartments at distinct stages of development, 2) Upload a differentially expressed transcriptome (e.g. expression changes in a TF mutant) to identify clusters that significantly perturb in the experiment and 3) query a gene set of interest to gain insights into its putative regulatory mechanisms.

Geneset Query

[Enter atleast 5 genes ]

Cluster enrichment tool

[Upload a genome-wide differential expression profile ]

Q-value threshold 0.05 0.01 0.001


Select modules active in:

Citation: bioRxiv preprint